species:   Fugra
pid:       PID0921
parent:    FgmilR-7dps-128
paralog:   
locus:     NC_026476.1:1027212-1027285
matures:   ['CCCUGAGGAGCACUUUGACACCU', 'GCCAAGCGCGACCUCAUGGCC']
srr:       SRR6516244
genome:    /Users/jax/+Genomes/Fungal_genomes/Fugra.GCF_000240135.3_ASM24013v3_genomic.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Zeng2018-ds.SRR6516244.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Zeng2018-ds.SRR6516244.cram NC_026476.1:1027212-1027285

0 out of bounds
3 alignments
3 proper strand
3 stranded perfect matches

     ***************************          *************************       
GGCCCUGAGGAGCACUUUGACACCUCCCACUUCAACCCCCAGAACUUUGAGGCCAAGCGCGACCUCAUGGCCAU
((((.(((((.((.(((.(...((((....(((........)))....)))).)))).))..))))).))))..
--CCCUGAGGAGCACUUUGACACCU------------------------------------------------- l=23 a=0 c
---------------------------------------------------GCCAAGCGCGACCUCAUGGCC-- l=21 a=0 c*
-----------------------------CUUCAACCCCCAGAACUUUGAGGCC-------------------- l=25 a=2 ma
---------------------------------------------------GCCAAGCGCGACCUCAUGGCC-- l=21 a=0 ma*

-----------------------------CUUCAACCCCCAGAACUUUGAGGCC-------------------- l=25 a=2 (ma)
--CCCUGAGGAGCACUUUGACAC--------------------------------------------------- l=21 a=1 

mb-00010
ax-1001001
ku-01
ss-101011101110
fn-111
